Joan Alexis Glaunès Maître de Conférence (HdR) en mathématiques - Université Paris Descartes MAP5, Université Paris Descartes 45 rue des Saints-Pères 75006 PARIS bureau : 812-F téléphone : 01 76 53 03 41 Liens: MAP5 -- UFR Math-Info -- Université Paris Descartes

• Articles de journaux avec comité de lecture
  
  

  • Pierre Roussillon and Joan Alexis Glaunès. Representation of Surfaces with Normal Cycles and Application to Surface Registration. Journal of Mathematical Imaging and Vision. 2019, pp. 1-27, bibtex

  • Claire Cury et al. Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids. Frontiers in Neuroscience. 2018; 12: 803. bibtex

  • Pierre Roussillon and Joan Alexis Glaunès. Kernel Metrics on Normal Cycles and Application to Curve Matching. SIAM Journal on Imaging Sciences. 2016, Volume 9, Issue 4, pp. 1991–2038, bibtex

  • Claire Cury et al. Incomplete Hippocampal Inversion: a comprehensive MRI study of over 2000 subjects. Frontiers in Neuroanatomy. Volume 9 (2015), Number 00160 bibtex

  • Claire Cury, Joan Alexis Glaunès, Marie Chupin, and Olivier Colliot. Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer’s disease. In: Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization (Mar. 2015), p. 10. bibtex

  • M. Micheli, J. A. Glaunès. Matrix-valued Kernels for Shape Deformation Analysis. Geometry, Imaging, and Computing. Volume 1 (2014), Number 1, Pages: 57 – 139 bibtex

  • Stéphanie Allassonnière, Jérémie Bigot, Joan Alexis Glaunès, Florian Maire, Frédéric J.P. Richard, Statistical models for deformable templates in image and shape analysis (Modèles statistiques d’atlas déformables pour l’analyse d’images et de formes) Annales mathématiques Blaise Pascal, 20 no. 1 (2013), p. 1-35 bibtex

  • Rémi Cuingnet, Joan Alexis Glaunès, Marie Chupin, Habib Benali, Olivier Colliot, Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data. IEEE Transactions on Pattern Analysis and Machine Intelligence, 10 Aug. 2012. IEEE computer Society Digital Library. IEEE Computer Society, DOI: 10.1109/TPAMI.2012.142. bibtex

  • Berar, M., Tilotta, F. M., Glaunès, J. A., Rozenholc, Y. Craniofacial reconstruction as a prediction problem using a Latent Root Regression model , Forensic science international, Volume 210, Issue 1, 228-236. 2011. bibtex

  • Auzias G, Colliot O, Glaunès J, Perrot M, Mangin JF, Trouvé A, Baillet S Diffeomorphic Brain Registration Under Exhaustive Sulcal Constraints. , IEEE Trans Med Imaging, 2011 Jan 28, doi:10.1109/TMI.2011.2108665. bibtex

  • F.M. Tilotta, Joan A. Glaunès, Frédéric J.P. Richard, Yves Rozenholc A local technique based on vectorized surfaces for craniofacial reconstruction , Forensic Science International, Volume 200, Issues 1-3, 15 July 2010, Pages 50-59, doi:10.1016/j.forsciint.2010.03.029. bibtex

  • François M. Lambert, David Malinvaud, Joan Glaunès, Catherine Bergot, Hans Straka, and Pierre-Paul Vidal Vestibular Asymmetry as the Cause of Idiopathic Scoliosis: A Possible Answer from Xenopus , The Journal of Neuroscience, October 7, 2009, 29(40):12477--12483. bibtex

  • F. Tilotta, F. Richard, J. Glaunès, M. Berar, S. Gey, S. Verdeille, Y. Rozenholc, J.-F. Gaudy, Construction and analysis of a head CT-scan database for craniofacial reconstruction , Forensic Science International, august, 2009, 191, 112.e1--112.e12 bibtex

  • Joan Glaunès, Anqi Qiu, Michael I. Miller, Laurent Younes: Large Deformation Diffeomorphic Metric Curve Mapping, International Journal of Computer vision, Springer, 2008, 80, 317--336. bibtex

  • Jacques, R., Glaunès, J., Ford, E., McNutt, T., Taylor, R., & Wong, J. SU‐FF‐I‐63: Temporal Constrained Registration of Arbitrary Surface Contours for Use in 4D Radiation Therapy. Medical Physics, 34(6), 2352-2352. (2007)

  • Marc Vaillant, Anqi Qiu, Joan Glaunès, Michael I. Miller: Diffeomorphic metric surface mapping in subregion of the superior temporal gyrus , NeuroImage, Volume 34, Issue 3, 1 February 2007, 1149--1159 bibtex

  • Joan Glaunès, Marc Vaillant, Michael I. Miller: Landmark Matching via Large Deformation Diffeomorphisms on the Sphere
    Journal of Mathematical Imaging and Vision 20: 179-200, 2004, Kluwer Academic Publishers. bibtex
  
  
  
• Chapitres de livre
  
  

  • Nicolas Charon, Benjamin Charlier, Joan Glaunès, Pietro Gori, Pierre Roussillon, Fidelity metrics between curves and surfaces: currents, varifolds, and normal cycles ,Riemannian Geometric Statistics in Medical Image Analysis, Chapter 12, p. 441-477 F. Nielsen (Ed.), Elsevier (2020). bibtex

  • Claire Cury, Joan Alexis Glaunès, Olivier Colliot, Diffeomorphic Iterative Centroid Methods for Template Estimation on Large Datasets, Geometric Theory of Information, Chapter 4, F. Nielsen (Ed.), Springer (2014). bibtex

  • Berar, M., Tilotta, F., Glaunès, J. A., Rozenholc, Y., Desvignes, M., Bucki, M., Payan, Y. Facial reconstruction as a regression problem. Digital Forensics for the Health Sciences: Applications in Practice and Research, 68-87. 2011. bibtex

  • Joan Glaunès, Alain Trouvé, Laurent Younes: Modeling planar shape variation via hamiltonian flows of curves , Statistics and Analysis of Shapes, H. Krim and A. Yezzi (Eds), Birkhauser, 2006, 335--361. bibtex

  
  
  
• Articles de conférences avec comité de lecture
  
  

  • Pierre Roussillon, Joan Glaunès. Surface Matching Using Normal Cycles., 3rd conference on Geometric Science of Information (GSI 2017), Nov 2017, Paris, France. bibtex

  • R. Zolfaghari, N. Epain, C.T. Jin, J. Glaunes, A. Tew, Kernel principal component analysis of the ear morphology, Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, New Orleans, USA, March 5-9, 2017.

  • R. Zolfaghari, N. Epain, C.T. Jin, J. Glaunes, A. Tew, Generating a Morphable Model of Ears, Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, Shanghai, China, March 20-25, 2016. bibtex

  • Pierre Roussillon, Joan A. Glaunès, Kernel Metrics on Normal Cycles and Application to Curve Matching , Proceedings of MFCA 2015 : 5th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany. bibtex

  • R. Zolfaghari, N. Epain, C.T. Jin, J. Glaunes, A. Tew, A multiscale LDDMM template algorithm for studying ear shape variations , Proceedings of 2014 International Conference on Signal Processing and Communication Systems, Gold Coast, Australia, Dec. 15-17, 2014. bibtex

  • Claire Cury, Joan A. Glaunès, Marie Chupin, Olivier Colliot, Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid, Proceedings of the 18th Conference on Medical Image Understanding and Analysis, London, United Kingdom, July 9-11, 2014. bibtex

  • R. Zolfaghari, N. Epain, C.T. Jin, J. Glaunes, A. Tew, Large Deformation Diffeomorphic Metric Mapping and Fast-Multipole Boundary Element Method provide new insights for Binaural Acoustics, Proceedings of the IEEE International Conference on Acoustics, Speech, and Signal Processing, Florence, Italy, May 4-9, 2014. bibtex

  • Claire Cury, Joan A. Glaunès, Olivier Colliot, Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents , Geometric Science of Information, Lecture Notes in Computer Science, Volume 8085, 2013, pp 103-111 bibtex

  • Viviana Siless, Joan Glaunès, Pamela Guevara, Jean-François Mangin, Cyril Poupon, Denis Le Bihan, Bertrand Thirion, Pierre Fillard, Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012 Lecture Notes in Computer Science Volume 7511, 2012, pp 57-65, DOI: 10.1007/978-3-642-33418-4_8. bibtex

  • Rémi Cuingnet, Joan Alexis Glaunès, Marie Chupin, Habib Benali and Olivier Colliot Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer’s Disease. , Machine Learning in Medical Imaging Lecture Notes in Computer Science, 2011, Volume 7009/2011, 201-208, DOI: 10.1007/978-3-642-24319-6_25. bibtex

  • Harris, M. D., Anderson, A. E., Ellis, B. J., Maas, S. A., Joshi, S. C., Peters, C. L., Glaunès, J.A., Weiss, J. A. Finite Element Predictions of Cartilage Mechanics in Normal Hips, In ASME 2009 Summer Bioengineering Conference (pp. 285-286). American Society of Mechanical Engineers. 2009, June. bibtex

  • G. Auzias, J.A. Glaunès, O. Colliot, M. Perrot, J.-F. Mangin, A. Trouvé, and S. Baillet, DISCO: a coherent diffeomorphic framework for brain registration under exhaustive sulcal constraints , in Medical Image Computing and Computer-Assisted Intervention, MICCAI 2009, Lecture Notes in Computer Science, 5761/2009, 730--738 bibtex

  • Guillaume Auzias, Joan Glaunès, Arnaud Cachia, Pascal Cathier, Eric Bardinet, Olivier Colliot, J. F. Mangin, Alain Trouvé, Sylvain Baillet: Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints , in Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008, pages 1127-1130. bibtex

  • Joan Glaunès, Sarang Joshi: Template estimation from unlabeled point set data and surfaces for Computational Anatomy Proceedings of MFCA-2006 International Workshop on Mathematical Foundations of Computational Anatomy, Copenhagen : Denmark (2006) bibtex

  • Marc Vaillant, Joan Glaunès: Surface matching via currents , Information Processing in Medical Imaging, Lecture Notes in Computer Science, Volume 3565/2005, 1-5, Springer 2005. bibtex

  • Joan Glaunès, Laurent Younes, Alain Trouvé: Diffeomorphic matching of distributions: A new approach for unlabelled point-sets and sub-manifolds matching
    Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR 2004. vol. 2, pages 712-718. bibtex

  
  
  
• Communications avec actes
  
  

  • Alexandre Routier, Marcel Prastawa, Benjamin Charlier, Cédric Doucet, Joan Alexis Glaunès, Stanley Durrleman Deformetrica: a software for statistical analysis of anatomical shapes. 21st Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Jun 2015, Honolulu, United States bibtex

  • Emilie Gérardin, Joan Alexis Glaunès, Marie Chupin, Ana B. Graciano Fouquier, Kevin Roussel, Stanley Durrleman, Thomas R Henry, Pierre-François Van de Moortele, Alain Trouvé, Olivier Colliot Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI. Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Honolulu, United States. (poster). bibtex

  • Cury, C., Glaunès, J., Gerardin, E., Chupin, M., Colliot, O. , Modelling morphological variability of the hippocampus using manifold learning and large deformations. In OHBM 2012-18th Annual Meeting of the Organization for Human Brain Mapping. 2012, June. (poster). bibtex

  • F. Tilotta, S. Gey, J. Glaunès, F. Richard, S. Verdeille, J.-F. Gaudy, Y. Rozenholc, Statistical Facial reconstruction by tree functional regression on surfaces , In Proc. of the third Mediterranean Academy of Forensic Sciences Congress, Porto, Portugal, june 2007. bibtex

Quelques résultats animés

Appariement de mesures

expériences 3D sur des données segmentées d'hippocampe

code Matlab.











Geodesic shooting - quelques animaux étranges

Vignobles Franck Glaunès